from __future__ import absolute_import
# This file is part of BurnMan - a thermoelastic and thermodynamic toolkit for the Earth and Planetary Sciences
# Copyright (C) 2012 - 2015 by the BurnMan team, released under the GNU
# GPL v2 or later.
import scipy.optimize as opt
from . import equation_of_state as eos
from ..utils.math import bracket
import warnings
import numpy as np
def bulk_modulus(volume, params):
"""
Compute the bulk modulus as per the Morse potential
equation of state.
Returns bulk modulus in the same units as
the reference bulk modulus.
Pressure must be in :math:`[Pa]`.
"""
VoverV0 = volume / params["V_0"]
x = (params["Kprime_0"] - 1.0) * (1.0 - np.power(VoverV0, 1.0 / 3.0))
K = params["K_0"] * (
(
2.0
/ (params["Kprime_0"] - 1.0)
* np.power(VoverV0, -2.0 / 3.0)
* (np.exp(2.0 * x) - np.exp(x))
)
+ (np.power(VoverV0, -1.0 / 3.0) * (2.0 * np.exp(2.0 * x) - np.exp(x)))
)
return K
def shear_modulus(volume, params):
"""
Shear modulus not currently implemented for this equation of state
"""
return 0.0
def morse_potential(VoverV0, params):
"""
Equation for the Morse Potential equation of state,
returns pressure in the same units that are supplied
for the reference bulk modulus (params['K_0'])
"""
x = (params["Kprime_0"] - 1.0) * (1.0 - np.power(VoverV0, 1.0 / 3.0))
return (
3.0
* params["K_0"]
/ (params["Kprime_0"] - 1.0)
* np.power(VoverV0, -2.0 / 3.0)
* (np.exp(2.0 * x) - np.exp(x))
) + params["P_0"]
def volume(pressure, params):
"""
Get the Morse Potential volume at a
reference temperature for a given pressure :math:`[Pa]`.
Returns molar volume in :math:`[m^3]`
"""
func = lambda V: morse_potential(V / params["V_0"], params) - pressure
try:
sol = bracket(func, params["V_0"], 1.0e-2 * params["V_0"])
except:
raise ValueError(
"Cannot find a volume, perhaps you are outside of the range of validity for the equation of state?"
)
return opt.brentq(func, sol[0], sol[1])
[docs]
class Morse(eos.EquationOfState):
"""
Class for the isothermal Morse Potential equation of state
detailed in :cite:`Stacey1981`.
This equation of state has no temperature dependence.
"""
[docs]
def volume(self, pressure, temperature, params):
"""
Returns volume :math:`[m^3]` as a function of pressure :math:`[Pa]`.
"""
return volume(pressure, params)
[docs]
def pressure(self, temperature, volume, params):
return morse_potential(volume / params["V_0"], params)
[docs]
def isothermal_bulk_modulus_reuss(self, pressure, temperature, volume, params):
"""
Returns isothermal bulk modulus :math:`K_T` :math:`[Pa]` as a function of pressure :math:`[Pa]`,
temperature :math:`[K]` and volume :math:`[m^3]`.
"""
return bulk_modulus(volume, params)
[docs]
def isentropic_bulk_modulus_reuss(self, pressure, temperature, volume, params):
"""
Returns adiabatic bulk modulus :math:`K_s` of the mineral. :math:`[Pa]`.
"""
return bulk_modulus(volume, params)
[docs]
def shear_modulus(self, pressure, temperature, volume, params):
"""
Returns shear modulus :math:`G` of the mineral. :math:`[Pa]`
"""
return shear_modulus(volume, params)
[docs]
def entropy(self, pressure, temperature, volume, params):
"""
Returns the molar entropy :math:`\\mathcal{S}` of the mineral. :math:`[J/K/mol]`
"""
return 0.0
[docs]
def molar_internal_energy(self, pressure, temperature, volume, params):
"""
Returns the internal energy :math:`\\mathcal{E}` of the mineral. :math:`[J/mol]`
"""
x = (params["Kprime_0"] - 1) * (1 - np.power(volume / params["V_0"], 1.0 / 3.0))
intPdV = (
9.0
/ 2.0
* params["V_0"]
* params["K_0"]
/ np.power(params["Kprime_0"] - 1.0, 2.0)
* (2.0 * np.exp(x) - np.exp(2.0 * x) - 1.0)
)
return -intPdV + params["E_0"]
[docs]
def gibbs_free_energy(self, pressure, temperature, volume, params):
"""
Returns the Gibbs free energy :math:`\\mathcal{G}` of the mineral. :math:`[J/mol]`
"""
return (
self.molar_internal_energy(pressure, temperature, volume, params)
+ volume * pressure
)
[docs]
def molar_heat_capacity_v(self, pressure, temperature, volume, params):
"""
Since this equation of state does not contain temperature effects, simply return a very large number. :math:`[J/K/mol]`
"""
return 1.0e99
[docs]
def molar_heat_capacity_p(self, pressure, temperature, volume, params):
"""
Since this equation of state does not contain temperature effects, simply return a very large number. :math:`[J/K/mol]`
"""
return 1.0e99
[docs]
def thermal_expansivity(self, pressure, temperature, volume, params):
"""
Since this equation of state does not contain temperature effects, simply return zero. :math:`[1/K]`
"""
return 0.0
[docs]
def grueneisen_parameter(self, pressure, temperature, volume, params):
"""
Since this equation of state does not contain temperature effects, simply return zero. :math:`[unitless]`
"""
return 0.0
[docs]
def validate_parameters(self, params):
"""
Check for existence and validity of the parameters
"""
if "E_0" not in params:
params["E_0"] = 0.0
if "P_0" not in params:
params["P_0"] = 0.0
# If G and Gprime are not included this is presumably deliberate,
# as we can model density and bulk modulus just fine without them,
# so just add them to the dictionary as nans
if "G_0" not in params:
params["G_0"] = float("nan")
if "Gprime_0" not in params:
params["Gprime_0"] = float("nan")
# Check that all the required keys are in the dictionary
expected_keys = ["V_0", "K_0", "Kprime_0", "G_0", "Gprime_0"]
for k in expected_keys:
if k not in params:
raise KeyError("params object missing parameter : " + k)
# Finally, check that the values are reasonable.
if params["P_0"] < 0.0:
warnings.warn("Unusual value for P_0", stacklevel=2)
if params["V_0"] < 1.0e-7 or params["V_0"] > 1.0e-3:
warnings.warn("Unusual value for V_0", stacklevel=2)
if params["K_0"] < 1.0e9 or params["K_0"] > 1.0e13:
warnings.warn("Unusual value for K_0", stacklevel=2)
if params["Kprime_0"] < 0.0 or params["Kprime_0"] > 10.0:
warnings.warn("Unusual value for Kprime_0", stacklevel=2)
if params["G_0"] < 0.0 or params["G_0"] > 1.0e13:
warnings.warn("Unusual value for G_0", stacklevel=2)
if params["Gprime_0"] < -5.0 or params["Gprime_0"] > 10.0:
warnings.warn("Unusual value for Gprime_0", stacklevel=2)